| Identifier | 5a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, DMSO) | δ 8.05 (d, J = 2.3 Hz, 1H), 7.75 – 7.63 (m, 2H), 4.95 – 4.87 (m, 1H), 3.97 (dt, J = 10.0, 7.0 Hz, 1H), 3.90 (ddd, J = 9.9, 7.7, 3.6 Hz, 1H), 2.77 (dq, J = 14.6, 7.3 Hz, 1H), 2.34 (ddt, J = 14.3, 7.2, 3.7 Hz, 1H) |
| ¹³C NMR (126 MHz, DMSO) | δ 170.3, 139.3, 131.7, 131.0, 127.0, 121.4, 120.1, 47.2, 46.7, 29.5 |
| MS (ESI⁺) m/z | 306.92 [M+H]⁺ |
Gwenaëlle Jézéquel, Dominik Kolling, Roya Shafiei, Katharina Rox, Andreas M. Kany, Norbert Sträter, Jesko Koehnke, Jörg Haupenthal, Anna K. H. Hirsch. “Stable phosphonate inhibitors of elastase LasB suppress Pseudomonas aeruginosa virulence via zinc-targeting pyrrolidone scaffolds.” ChemRxiv (). https://doi.org/10.26434/chemrxiv.15007028/v2
| Identifier | 5b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, CDCl₃) | δ 7.62 – 7.53 (m, 2H), 7.38 – 7.27 (m, 2H), 7.13 (ddt, J = 8.6, 7.3, 1.2 Hz, 1H), 4.55 – 4.46 (m, 1H), 4.04 – 3.93 (m, 1H), 3.83 – 3.73 (m, 1H), 2.73 – 2.59 (m, 1H), 2.39 (ddt, J = 14.3, 6.5, 2.7 Hz, 1H) |
| ¹³C NMR (126 MHz, CDCl₃) | δ 169.5, 138.9, 129.0 (2C), 125.4, 120.1 (2C), 46.7, 45.4, 30.0 |
| MS (ESI⁺) m/z | 240.00 [M+H]⁺ |
| Identifier | 6a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.87 (d, J = 1.9 Hz, 1H), 7.42 (d, J = 2.0 Hz, 2H), 4.21 – 4.04 (m, 4H), 3.94 – 3.75 (m, 3H), 2.53 – 2.24 (m, 2H), 1.25 (t, J = 7.0 Hz, 6H) |
| MS (ESI⁺) m/z | 366.04 [M+H]⁺ |
| Identifier | 6b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, DMSO) | δ 7.66 – 7.60 (m, 2H), 7.45 – 7.35 (m, 2H), 7.17 (td, J = 7.4, 1.2 Hz, 1H), 4.19 – 3.93 (m, 5H), 3.92 – 3.80 (m, 2H), 3.43 (ddd, J = 21.6, 10.0, 6.1 Hz, 1H), 2.50 – 2.19 (m, 1H), 1.25 (td, J = 7.2, 4.0 Hz, 6H) |
| ¹³C NMR (126 MHz, DMSO) | δ 169.0, 139.7, 129.2 (2C), 124.9, 120.2 (2C), 62.7, 62.2, 47.4, 42.7, 20.2, 20.2, 16.8, 16.7 |
| MS (ESI⁺) m/z | 298.12 [M+H]⁺ |
| Identifier | 7a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 8.02 (d, J = 2.3 Hz, 1H), 7.58 – 7.49 (m, 2H), 3.98 (q, J = 8.1 Hz, 1H), 3.90 (td, J = 8.9, 4.7 Hz, 1H), 3.19 (ddd, J = 22.0, 10.0, 5.9 Hz, 1H), 2.48 (qt, J = 13.0, 9.0 Hz, 2H) |
| ¹³C NMR (126 MHz, MeOD) | δ 170.7, 139.0, 132.0, 130.1, 127.4, 121.8, 119.4, 43.9, 42.8, 19.9 |
| HRMS (ESI⁺) | calcd for C₁₀H₁₁Cl₂NO₄P⁺ [M+H]⁺ 309.9797, found 307.9795 |
| Identifier | 7b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.65 – 7.58 (m, 2H), 7.57 (s, 2H), 7.43 – 7.36 (m, 2H), 7.25 – 7.17 (m, 1H), 4.01 (td, J = 8.7, 6.8 Hz, 1H), 3.92 (td, J = 8.9, 4.9 Hz, 1H), 3.17 (ddd, J = 21.9, 9.8, 5.8 Hz, 1H), 2.50 (dddd, J = 32.0, 21.3, 11.2, 7.2 Hz, 2H) |
| ¹³C NMR (126 MHz, MeOD) | δ 170.6, 139.1, 128.4 (2C), 124.9, 120.8 (2C), 43.9, 42.8, 20.1 |
| HRMS (ESI⁺) | calcd for C₁₀H₁₃NO₄P⁺ [M+H]⁺ 242.0577, found 242.0577 |
| Identifier | 8a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, CDCl₃) | δ 7.75 (d, J = 2.6 Hz, 1H), 7.47 (dd, J = 8.9, 2.6 Hz, 1H), 7.37 (d, J = 8.8 Hz, 1H), 4.26 (t, J = 8.4 Hz, 1H), 3.79 – 3.65 (m, 2H), 2.45 (dddd, J = 13.2, 8.4, 7.2, 3.4 Hz, 1H), 1.96 (dq, J = 13.2, 8.3 Hz, 1H) |
| MS (ESI⁺) m/z | 271.01 [M+H]⁺ |
| Identifier | 8b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, CDCl₃) | δ 7.60 – 7.53 (m, 2H), 7.36 – 7.29 (m, 2H), 7.14 – 7.09 (m, 1H), 4.27 (t, J = 8.4 Hz, 1H), 3.83 – 3.70 (m, 2H), 2.44 (dddd, J = 13.1, 8.3, 7.1, 3.5 Hz, 1H), 1.96 (dq, J = 13.1, 8.3 Hz, 1H) |
| ¹³C NMR (126 MHz, CDCl₃) | δ 162.6, 138.7, 129.0 (2C), 125.3, 119.8 (2C), 60.5, 45.3, 25.2 |
| MS (ESI⁺) m/z | 203.09 [M+H]⁺ |
| Identifier | 9a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, CDCl₃) | δ 7.69 (d, J = 2.5 Hz, 1H), 7.52 – 7.40 (m, 1H), 7.31 (d, J = 8.8 Hz, 1H), 3.79 (dt, J = 26.7, 7.9 Hz, 2H), 3.65 (dd, J = 9.6, 4.0 Hz, 1H), 2.97 (bs, NH₂), 2.54 (m, 1H), 1.95 (m, 1H) |
| MS (ESI⁺) m/z | 245.02 [M+H]⁺ |
| Identifier | 9b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, CDCl₃) | δ 7.59 – 7.53 (m, 2H), 7.31 (t, J = 8.0 Hz, 2H), 7.09 (td, J = 7.4, 1.3 Hz, 1H), 4.10 (bs, NH₂), 3.76 – 3.66 (m, 2H), 3.62 (t, J = 9.3 Hz, 1H), 2.50 (m, 1H), 1.80 (m, 1H) |
| MS (ESI⁺) m/z | 177.10 [M+H]⁺ |
| Identifier | 11a |
|---|---|
| MS (ESI⁺) m/z | 479.13 [M+H]⁺ |
| Identifier | 11b |
|---|---|
| MS (ESI⁺) m/z | 411.20 [M+H]⁺ |
| Identifier | 12a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, DMSO) | δ 8.26 (d, J = 8.2 Hz, 1H, NH), 8.04 (d, J = 1.8 Hz, 1H), 7.64 (d, J = 2.1 Hz, 2H), 4.68 (dt, J = 10.3, 8.4 Hz, 1H), 3.81 (td, J = 9.3, 2.0 Hz, 1H), 3.74 (td, J = 9.4, 6.9 Hz, 1H), 2.70 (ddd, J = 21.8, 11.4, 3.2 Hz, 1H), 2.41 – 2.32 (m, 1H), 1.98 – 1.81 (m, 2H), 1.65 – 1.54 (m, 1H), 1.37 (dtd, J = 13.2, 9.7, 3.2 Hz, 1H), 0.86 (t, J = 7.0 Hz, 6H) |
| ¹³C NMR (126 MHz, DMSO) | δ 172.5, 169.9, 139.7, 131.4, 130.8, 126.0, 120.8, 119.3, 51.6, 45.4, 44.7, 36.3, 26.3, 25.2, 23.6, 21.6 |
| HRMS (ESI⁺) | calcd for C₁₆H₂₂Cl₂N₂O₅P⁺ [M+H]⁺ 423.0643, found 423.0634 |
| Identifier | 12b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, DMSO) | δ 8.30 (d, J = 7.3 Hz, 1H, NH), 7.68 (d, J = 8.2 Hz, 2H), 7.38 (t, J = 7.8 Hz, 2H), 7.14 (t, J = 7.3 Hz, 1H), 4.39 (q, J = 8.8 Hz, 1H), 4.15 (bs, 2H, OH), 3.76 (dtd, J = 16.3, 9.3, 6.9 Hz, 2H), 2.73 (ddd, J = 21.6, 11.5, 3.2 Hz, 1H), 2.39 (dddd, J = 11.8, 9.2, 6.9, 2.4 Hz, 1H), 1.97 (dq, J = 12.2, 9.3 Hz, 1H), 1.83 (tdd, J = 12.1, 7.6, 4.4 Hz, 1H), 1.55 (tt, J = 12.4, 6.1 Hz, 1H), 1.38 (dtd, J = 13.2, 9.7, 3.3 Hz, 1H), 0.85 (d, J = 6.5 Hz, 6H) |
| ¹³C NMR (126 MHz, DMSO) | δ 171.9, 170.0, 140.1, 129.2 (2C), 124.5, 119.7 (2C), 52.6, 46.1, 45.1, 36.8, 26.4, 25.7, 23.9, 21.8 |
| HRMS (ESI⁺) | calcd for C₁₆H₂₄N₂O₅P⁺ [M+H]⁺ 355.1417, found 355.1416 |
| Identifier | 14a |
|---|---|
| MS (ESI⁺) m/z | 415.13 [M+H]⁺ |
| Identifier | 14b |
|---|---|
| MS (ESI⁺) m/z | 347.19 [M+H]⁺ |
| Identifier | 15a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, Acetone) | δ 8.11 (d, J = 2.5 Hz, 1H), 7.68 (dt, J = 9.0, 2.1 Hz, 1H), 7.56 (dd, J = 8.9, 1.6 Hz, 1H), 4.70 – 4.59 (m, 1H), 3.94 – 3.86 (m, 2H), 3.16 (t, J = 7.7 Hz, 1H), 2.60 (s, 1H), 2.14 (d, J = 10.2 Hz, 1H), 1.81 – 1.67 (m, 2H), 1.62 (dt, J = 13.8, 6.9 Hz, 1H), 0.91 (d, J = 6.6 Hz, 6H) |
| ¹³C NMR (126 MHz, Acetone) | δ 172.5, 170.3, 167.3, 139.7, 131.1, 126.8, 121.4, 120.6, 119.3, 52.8, 50.1, 45.7, 40.8, 26.6, 25.8, 22.4 (2C) |
| HRMS (ESI⁺) | calcd for C₁₇H₂₂Cl₂N₃O₄⁺ [M+H]⁺ 402.0982, found 402.0989 |
| Identifier | 15b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, DMSO) | δ 10.50 (d, J = 1.7 Hz, 1H, NH), 8.98 (d, J = 1.6 Hz, 1H, OH), 8.11 (t, J = 7.6 Hz, 1H, NH), 7.67 (d, J = 8.1 Hz, 2H), 7.39 (t, J = 7.9 Hz, 2H), 7.15 (t, J = 7.4 Hz, 1H), 4.55 (dt, J = 10.3, 8.1 Hz, 1H), 3.77 (dd, J = 9.6, 4.2 Hz, 2H), 3.04 (t, J = 7.6 Hz, 1H), 2.39 (ddt, J = 12.9, 8.8, 4.4 Hz, 1H), 2.00 – 1.88 (m, 1H), 1.70 – 1.55 (m, 2H), 1.49 (hept, J = 6.8 Hz, 1H), 0.87 (d, J = 6.5 Hz, 6H) |
| ¹³C NMR (126 MHz, DMSO) | δ 170.7, 168.6, 165.9, 138.9, 128.1 (2C), 123.6, 118.6 (2C), 51.1, 48.3, 43.8, 38.0, 24.9, 24.7, 21.9, 21.5 |
| HRMS (ESI⁺) | calcd for C₁₇H₂₄N₃O₄⁺ [M+H]⁺ 334.1761, found 334.1754 |
| Identifier | 17a |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 8.13 (s, 1H), 8.03 (d, J = 2.5 Hz, 1H), 7.62 (dd, J = 8.9, 2.6 Hz, 1H), 7.55 (d, J = 8.8 Hz, 1H), 5.72 (t, J = 9.4 Hz, 1H), 4.06 (dtd, J = 25.3, 9.4, 7.0 Hz, 2H), 3.75 (s, 2H), 2.96 – 2.86 (m, 1H), 2.84 – 2.72 (m, 1H), 2.35 (s, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 168.7, 142.8, 138.5, 132.2, 130.3, 128.1, 124.7, 121.6, 119.3, 61.7, 52.8, 45.2, 43.3 (2C), 25.4 |
| HRMS (ESI⁺) | calcd for C₁₅H₁₈Cl₂N₅O⁺ [M+H]⁺ 354.0883, found 354.0876 |
| Identifier | 17b |
|---|---|
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 8.14 (s, 1H), 7.72 – 7.63 (m, 2H), 7.47 – 7.39 (m, 2H), 7.24 (t, J = 7.4 Hz, 1H), 5.71 (t, J = 9.3 Hz, 1H), 4.16 – 4.04 (m, 2H), 3.77 (s, 2H), 2.98 – 2.86 (m, 1H), 2.79 (dq, J = 12.8, 9.0 Hz, 1H), 2.37 (s, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 169.9, 143.9, 140.1, 130.0 (2C), 126.9, 126.1, 121.9 (2C), 63.3, 54.1, 47.1, 44.7 (2C), 27.1 |
| HRMS (ESI⁺) | calcd for C₁₅H₂₀N₅O⁺ [M+H]⁺ 286.1662, found 286.1660 |
| Identifier | 18a |
|---|---|
| Diastereomer ratio | α:β 70:30 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.96 – 7.90 (m, 2H), 7.78 – 7.72 (m, 2H), 7.67 – 7.62 (m, 2H), 7.62 – 7.55 (m, 1H), 7.55 – 7.48 (m, 2H), 4.78 – 4.70 (m, 1H), 3.88 (dtt, J = 13.0, 9.5, 5.0 Hz, 2H), 2.97 (ddt, J = 22.2, 11.5, 3.8 Hz, 1H), 2.58 (dqd, J = 14.2, 7.1, 3.7 Hz, 1H), 2.19 – 2.01 (m, 2H), 1.75 – 1.65 (m, 1H), 1.58 (ddq, J = 14.0, 9.9, 5.0 Hz, 1H), 1.01 – 0.93 (m, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.5, 172.0, 168.8, 137.2, 136.9, 136.2, 132.9, 129.6 (2C), 128.6 (2C), 122.5 (2C), 122.1 (2C), 53.7, 46.9, 46.3, 37.1, 27.7, 26.8, 23.8, 21.8 |
| HRMS (ESI⁺) | calcd for C₂₃H₂₉N₃O₆P⁺ [M+H]⁺ 474.1788, found 474.1785 |
| Identifier | 18b |
|---|---|
| Diastereomer ratio | α:β 0:100 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.96 – 7.90 (m, 2H), 7.75 (dd, J = 8.7, 2.1 Hz, 2H), 7.65 (dd, J = 9.1, 2.1 Hz, 2H), 7.62 – 7.55 (m, 1H), 7.52 (td, J = 7.8, 2.0 Hz, 2H), 4.64 (t, J = 9.5 Hz, 1H), 3.95 – 3.84 (m, 2H), 2.94 (ddd, J = 22.4, 11.6, 3.0 Hz, 1H), 2.62 – 2.53 (m, 1H), 2.21 – 2.12 (m, 1H), 2.08 – 2.04 (m, 1H), 1.71 – 1.67 (m, 1H), 1.64 – 1.54 (m, 1H), 0.96 (td, J = 5.7, 1.8 Hz, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.7, 172.3, 168.8, 137.2, 136.9, 136.2, 132.9, 129.6 (2C), 128.6 (2C), 122.5 (2C), 122.2 (2C), 53.9, 47.1, 46.4, 37.3, 27.8, 26.6, 23.8, 21.7 |
| HRMS (ESI⁺) | calcd for C₂₃H₂₉N₃O₆P⁺ [M+H]⁺ 474.1788, found 474.1783 |
| Identifier | 19 |
|---|---|
| Diastereomer ratio | α:β 60:40 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, DMSO) | δ 10.18 (s, 1H, NH), 8.32 (d, J = 7.3 Hz, 2H, OH), 8.23 (d, J = 8.2 Hz, 1H, NH), 7.89 (d, J = 7.9 Hz, 2H), 7.81 – 7.75 (m, 2H), 7.66 (d, J = 8.6 Hz, 2H), 7.39 (d, J = 7.9 Hz, 2H), 4.67 (q, J = 9.1 Hz, 1H- α), 4.40 (q, J = 8.8 Hz, 1H- β), 3.77 (hept, J = 8.4 Hz, 2H), 2.97 (h, J = 6.9 Hz, 1H), 2.73 (ddd, J = 22.3, 11.4, 3.2 Hz, 1H), 2.41 – 2.37 (m, 1H), 1.92 – 1.88 (m, 1H), 2.06 – 1.76 (m, 1H), 1.66 – 1.58 (m, 1H), 1.43 – 1.34 (m, 1H), 1.24 (d, J = 6.9 Hz, 6H), 0.90 – 0.83 (m, 6H) |
| ¹³C NMR (126 MHz, DMSO) | δ 171.4, 169.3, 165.3, 152.2, 135.5, 135.3, 132.6, 127.8 (2C), 126.3 (2C), 120.5 (2C), 119.4 (2C), 51.3, 44.7, 44.5, 36.1, 33.4, 26.0, 25.5, 23.7 (2C), 23.5, 21.5 |
| HRMS (ESI⁺) | calcd for C₂₆H₃₅N₃O₆P⁺ [M+H]⁺ 516.2261, found 516.2255 |
| Identifier | 20a |
|---|---|
| Diastereomer ratio | α:β 88:12 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.93 – 7.86 (m, 1H), 7.74 – 7.68 (m, 3H), 7.67 – 7.56 (m, 2H), 7.18 (t, J = 3.7 Hz, 1H), 4.74 (t, J = 8.6 Hz, 1H), 3.94 – 3.82 (m, 2H), 2.95 (ddd, J = 22.5, 11.5, 3.2 Hz, 1H), 2.63 – 2.53 (m, 1H), 2.19 – 2.08 (m, 1H), 2.08 – 2.02 (m, 1H), 1.76 – 1.66 (m, 1H), 1.64 – 1.52 (m, 1H), 0.97 (dd, J = 6.6, 3.6 Hz, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.6, 172.3, 162.7, 140.8, 136.9, 136.9, 132.5, 130.1, 129.0, 122.4 (2C), 122.1 (2C), 53.7, 47.4, 46.9, 37.2, 27.7, 26.8, 23.8, 21.7 |
| HRMS (ESI⁺) | calcd for C₂₁H₂₇N₃O₆PS⁺ [M+H]⁺ 480.1353, found 480.1359 |
| Identifier | 20b |
|---|---|
| Diastereomer ratio | α:β 0:100 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.90 (dd, J = 3.8, 1.1 Hz, 1H), 7.75 – 7.69 (m, 3H), 7.68 – 7.61 (m, 2H), 7.18 (dd, J = 5.0, 3.8 Hz, 1H), 4.64 (t, J = 9.5 Hz, 1H), 3.95 – 3.84 (m, 2H), 2.93 (ddd, J = 22.2, 11.6, 3.2 Hz, 1H), 2.62 – 2.52 (m, 1H), 2.21 – 2.00 (m, 1H), 2.07 – 2.04 (m, 1H), 1.73 – 1.64 (m, 1H), 1.66 – 1.54 (m, 1H), 0.95 (dd, J = 6.5, 5.1 Hz, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.7, 172.4, 162.7, 140.8, 136.9, 136.9, 132.5, 130.1, 129.0, 122.4 (2C), 122.2 (2C), 53.9, 47.5, 47.1, 37.3, 27.9, 26.6, 23.8, 21.7 |
| HRMS (ESI⁺) | calcd for C₂₁H₂₇N₃O₆PS⁺ [M+H]⁺ 480.1353, found 480.1358 |
| Identifier | 21a |
|---|---|
| Diastereomer ratio | α:β 70:30 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.58 (s, 4H), 7.33 (s, 4H), 4.71 (t, J = 9.5 Hz, 1H), 3.84 (dtt, J = 13.0, 9.5, 5.0 Hz, 2H), 3.67 (s, 2H), 2.95 (dd, J = 21.6, 10.3 Hz, 1H), 2.60 – 2.50 (m, 1H), 2.18 – 2.00 (m, 2H), 1.73 – 1.65 (m, 1H), 1.62 – 1.54 (m, 1H), 0.96 (dd, J = 6.5, 4.2 Hz, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.5, 172.2, 171.7, 137.1, 136.7, 135.6, 133.9, 131.8 (2C), 129.6 (2C), 122.2 (2C), 121.5 (2C), 53.7, 47.3, 46.9, 43.8, 37.1, 27.7, 26.8, 23.8, 21.7 |
| HRMS (ESI⁺) | calcd for C₂₄H₃₀ClN₃O₆P⁺ [M+H]⁺ 522.1555, found 522.1568 |
| Identifier | 21b |
|---|---|
| Diastereomer ratio | α:β 0:100 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.59 (s, 4H), 7.33 (s, 4H), 4.72 (t, J = 9.5 Hz, 1H), 3.85 (ddt, J = 16.6, 9.7, 5.1 Hz, 2H), 3.67 (s, 2H), 2.94 (ddd, J = 22.3, 11.3, 3.2 Hz, 1H), 2.61 – 2.51 (m, 1H), 2.15 – 2.07 (m, 1H), 2.07 – 1.96 (m, 1H), 1.74 – 1.66 (m, 1H), 1.62 – 1.52 (m, 1H), 1.03 – 0.88 (m, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.5, 172.2, 171.2, 137.1, 136.7, 135.6, 133.9, 131.8 (2C), 129.6 (2C), 122.2 (2C), 121.5 (2C), 53.7, 47.4, 46.9, 43.8, 37.1, 27.7, 26.8, 23.8, 21.7 |
| HRMS (ESI⁺) | calcd for C₂₄H₃₀ClN₃O₆P⁺ [M+H]⁺ 522.1555, found 522.1566 |
| Identifier | 22 |
|---|---|
| Diastereomer ratio | α:β 75:25 |
| NMR reporting reference | Chemical shifts are given in parts per million (ppm) and referenced against the residual proton or carbon resonances of the >99 % deuterated solvents as internal standard |
| ¹H NMR (500 MHz, MeOD) | δ 7.63 – 7.55 (m, 4H), 7.38 – 7.29 (m, 4H), 7.28 – 7.21 (m, 1H), 4.71 (t, J = 9.4 Hz, 1H), 3.91 – 3.80 (m, 2H), 3.67 (s, 2H), 2.93 – 2.84 (m, 1H), 2.57 – 2.53 (m, 1H), 2.16 – 2.03 (m, 2H), 1.72 – 1.68 (m, 1H), 1.61 – 1.58 (m, 1H), 0.98 – 0.90 (m, 6H) |
| ¹³C NMR (126 MHz, MeOD) | δ 173.6, 172.3 (2C), 137.2, 136.8, 136.6, 130.1 (2C), 129.6 (2C), 128.0, 122.2 (2C), 121.5 (2C), 53.7, 47.8, 46.9, 44.7, 37.4, 27.9, 26.8, 23.8, 21.7 |
| HRMS (ESI⁺) | calcd for C₂₄H₃₁N₃O₆P⁺ [M+H]⁺ 488.1945, found 488.1950 |
| LC-MS purity (UV trace, 254 nm; area percentage method) | >95 % |
|---|
| PDB entry for final coordinates | 9GM4 |
|---|---|
| Single-crystal X-ray diffraction (100 K), resolution | 1.5 Å |
| Single-crystal X-ray diffraction, observed diastereomer | Only the (R)-configured pyrrolidone diastereomer was observed in the co-crystal structure |
| Cα RMSD, LasB–15b versus LasB–thiol-based inhibitor complex (PDB 7NLM) | 1.28 Å |
| Conformation comparison, LasB–15b versus LasB–thiol-based inhibitor complex (PDB 7NLM) | In the co-crystal structure with 15b, LasB adopts a distinctly more closed conformation than in the LasB structure with the thiol-based inhibitor |
| Asn112 side-chain distance, LasB–15b versus LasB–thiol-based inhibitor complex (PDB 7NLM) | 2.5 Å |
| Cα RMSD, LasB–15b versus LasB–phosphonate-based inhibitor complex (PDB 8CC4) | 0.64 Å |
| Cα RMSD, LasB–15b versus LasB–phosphonate-based dipeptide inhibitor complex (PDB 9FQD) | 0.52 Å |
| Reporting qualifier | Statistics for the highest resolution shell are shown in parentheses |
| PDB code in data-collection and refinement statistics | 8GM4 |
| Space group | P 2₁ 2₁ 2₁ |
| Cell dimensions, a, b, c (Å) | 43.5, 52.2, 122.3 |
| Cell dimensions, α, β, γ (°) | 90.0, 90.0, 90.0 |
| Wavelength (Å) | 0.8856 |
| Data collection, resolution (Å) | 33.44 – 1.51 (1.57 – 1.51) |
| CC₁/₂ | 0.994 (0.808) |
| I/σI | 8.0 (2.3) |
| Completeness (%) | 99.8 (99.8) |
| Redundancy | 4.6 (4.7) |
| Refinement, resolution (Å) | 33.44 – 1.51 |
| Refinement, number of reflections | 44284 (4348) |
| Rwork / Rfree | 0.152 / 0.170 |
| Number of atoms | 2736 |
| Number of atoms, protein | 2347 |
| Number of atoms, ligand/ion | 155 |
| Number of atoms, water | 315 |
| B-factors | 16.82 |
| B-factors, protein | 15.07 |
| B-factors, ligand/ion | 22.65 |
| B-factors, water | 28.51 |
| R.m.s. deviations, bond lengths (Å) | 0.009 |
| R.m.s. deviations, bond angles (°) | 1.00 |
| MolProbity clash score | 3.7 |
| Ramachandran, favoured (%) | 95.95 |
| Ramachandran, allowed (%) | 3.72 |
| Ramachandran, outliers (%) | 0.34 |