Pavel S. Kulyabin, Alejandra Sophia Lozano Perez, David B. Cordes, Aidan P. Mackay, Amit Kumar. “Ligand backbone engineering enables pincer catalysts for highly efficient hydrogenation reactions.” ChemRxiv (). https://doi.org/10.26434/chemrxiv.15007666/v1

cis-(piperidine-2,6-diyl)dimethanol
Identifier P2
¹H NMR (400 MHz, CD₃OD, 298 K) δ 3.54 (dd, J = 10.7, 4.1 Hz, 2H), 3.38 (dd, J = 10.7, 8.5 Hz, 2H), 2.66 (ddq, J = 11.2, 6.5, 2.4 Hz, 2H), 1.93 – 1.76 (m, 1H), 1.69 – 1.53 (m, 2H), 1.42 (qt, J = 13.2, 4.0 Hz, 1H), 1.04 (qd, J = 12.9, 4.0 Hz, 2H)
¹³C NMR {¹H} (101 MHz, CD₃OD, 298 K) δ, 67.1, 59.4, 29.1, 24.9
HRMS (ESI) calcd for C₇H₁₅NNaO₂⁺ [M+Na]⁺: 168.0995, found: 168.0994
SI, pp. 3–4
cis-2,6-bis(chloromethyl)piperidine
Identifier P3
¹H NMR (400 MHz, CDCl₃, 298 K) δ 3.56 (dd, J = 10.7, 3.8 Hz, 2H), 3.41 (dd, J = 10.7, 8.7 Hz, 2H), 2.81 (dddd, J = 11.2, 8.7, 3.7, 2.5 Hz, 2H), 2.53 (br.s, 1H), 1.87 (m, 1H), 1.67 (m, 2H), 1.39 (qt, J = 13.2, 3.9 Hz, 1H), 1.10 (tdd, J = 13.0, 11.5, 4.0 Hz, 2H)
¹³C NMR {¹H} (101 MHz, CDCl₃, 298 K) δ 57.5, 49.8, 30.1, 23.9
HRMS (ESI) calcd for C₇H₁₄Cl₂N⁺ [M+H]⁺: 182.0498, found: 182.0498
SI, pp. 4–5
cis-2,6-bis((ethylthio)methyl)piperidine
Identifier L1
¹H NMR (400 MHz, CD₃OD, 298 K) δ, 2.75 (dd, J = 13.4, 4.0 Hz, 2H), 2.62 (m, 2H), 2.56 (qd, J = 7.4, 1.8 Hz, 6H), 2.39 (dd, J = 13.4, 9.7 Hz, 2H), 1.88 – 1.77 (m, 1H), 1.77 – 1.67 (m, 2H), 1.42 (qt, J = 13.1, 3.9 Hz, 1H), 1.26 (s, 6H), 1.08 (tdd, J = 13.1, 11.3, 4.0 Hz, 2H)
¹³C NMR {¹H} (101 MHz, CD₃OD, 298 K) δ 56.6, 39.0, 33.0, 26.7, 25.5, 15.4
HRMS (ESI) calcd for C₁₁H₂₄NS₂⁺ [M+H]⁺: 234.1345, found: 234.1345
SI, pp. 6–7
dimethyl 4-hydroxypyridine-2,6-dicarboxylate hydrochloride
¹H NMR (400 MHz, CD₃OD, 298 K) δ, 7.87 (s, 2H), 4.09 (s, 6H)
¹³C NMR {¹H} (101 MHz, CD₃OD, 298 K) δ, 174.7, 161.5, 145.5, 117.7, 54.8
SI, pp. 7–8
methyl 4-methoxypyridine-2,6-dicarboxylate hydrochloride
Identifier P4
Name in characterization text Dimethyl 4-methoxypyridine-2,6-dicarboxylate
¹H NMR (400 MHz, CDCl₃) δ 7.81 (s, 2H), 4.00 (s, 6H), 3.97 (s, 3H)
SI, p. 9
dimethyl (2R,4s,6S)-4-methoxypiperidine-2,6-dicarboxylate
Identifier P5
¹H NMR (400 MHz, CDCl₃, 298 K) δ, 3.74 (s, 6H), 3.40 – 3.34 (m, 2H), 3.36 (s, 3H), 3.34 – 3.24 (m, 1H), 2.38 (m, 2H), 2.31 (m, 1H), 1.27 (q, J = 12.1 Hz, 2H)
¹³C NMR {¹H} (101 MHz, CDCl₃, 298 K) δ 172.2, 77.1, 56.6, 55.8, 52.4, 34.7
HRMS (ESI) calcd for C₁₀H₁₇NNaO₅⁺ [M+Na]⁺: 254.0999, found: 254.0994
SI, pp. 9–10
((2R,4s,6S)-4-methoxypiperidine-2,6-diyl)dimethanol
Identifier P6
¹H NMR (400 MHz, CD₃OD, 298 K) δ 3.56 (dd, J = 10.8, 4.2 Hz, 2H), 3.44 (dd, J = 10.7, 8.0 Hz, 2H), 3.37 – 3.32 (m, 1H), 3.35 (s, 3H), 2.70 (dddt, J = 11.9, 6.5, 4.1, 2.2 Hz, 2H), 2.12 – 1.93 (m, 2H), 0.93 (q, J = 11.8 Hz, 2H)
¹³C NMR {¹H} (101 MHz, MeOD, 298 K) δ, 78.8, 66.7, 57.5, 55.8, 35.2
HRMS (ESI) calcd for C₈H₁₇NNaO₃⁺ [M+Na]⁺: 198.1101, found: 198.1098
SI, pp. 10–11
(2R,4s,6S)-2,6-bis(chloromethyl)-4-methoxypiperidine
Identifier P7
¹H NMR (400 MHz, CD₃OD, 298 K) δ, 3.67 (dd, J = 10.9, 4.2 Hz, 2H), 3.52 (dd, J = 10.9, 7.8 Hz, 2H), 3.37 – 3.32 (m, 1H), 3.36 (s, 3H), 2.89 (dddd, J = 11.8, 7.8, 4.2, 2.4 Hz, 2H), 2.20 – 2.08 (m, 2H), 1.00 (q, J = 11.6 Hz, 2H)
¹³C NMR {¹H} (101 MHz, CD₃OD, 298 K) δ, 78.1, 56.6, 56.0, 49.5, 36.3
HRMS (ESI) calcd for C₈H₁₅Cl₂NNaO⁺ [M+Na]⁺: 234.0423, found: 234.0420
SI, pp. 12–13
(2R,4s,6S)-2,6-bis((ethylthio)methyl)-4-methoxypiperidine
Identifier L2
¹H NMR (400 MHz, CDCl₃, 298 K) δ, 3.35 (s, 3H), 3.22 (tt, J = 11.0, 4.4 Hz, 1H), 2.71 (dd, J = 12.6, 4.1 Hz, 2H), 2.68 – 2.60 (m, 3H), 2.56 (q, J = 7.4 Hz, 4H), 2.50 (dd, J = 12.6, 8.5 Hz, 2H), 2.09 (dd, J = 11.7, 4.2 Hz, 2H), 1.26 (t, J = 7.4 Hz, 7H), 1.05 (q, J = 11.1 Hz, 2H)
¹³C NMR {¹H} (101 MHz, CDCl₃, 298 K) δ, 77.8, 55.8, 53.8, 38.7, 38.2, 26.6, 15.1
HRMS (ESI) calcd for C₁₂H₂₅NNaOS₂⁺ [M+Na]⁺: 286.1270, found: 286.1266
SI, pp. 13–14
Ru-4
NMR sample Mixture of 3 isomers differing by the relative orientation of the SEt groups with respect to the SNS ligand plane
¹H NMR (400 MHz, CD₂Cl₂, 298 K) δ, 7.68 – 7.52 (m, 6H), 7. 33 (m, 9H), [4.29 (m), 4.09 (br.s), 3.73 (br.s), 3.52 (br.s), 2H], 3.38 (q, J = 11.9 Hz, 1H), 3.24 (dd, J = 11.1, 2.5 Hz, 1H), 2.72 (m, 2H), 2.66 (m, 1H), 2.34 (t, J = 12.0 Hz, 1H), 2.11 (m, 1H), 2.04 (m, 1H), 2.01 – 1.90 (m, 1H), [1.64 (m), 1.78 – 1.50 (m), 3H), 1.49 – 1.24 (m, 3H), [1.00 (t, J = 7.5 Hz), 0.91 (t, J = 6.7 Hz), 6H)
¹³C NMR {¹H} (101 MHz, CD₂Cl₂, 298 K) δ, 137.3 (d, J = 38.8 Hz), 134.7 (d, J = 10.0 Hz), 129.2 (d, J = 9.4 Hz), 127.7 (d, J = 9.1 Hz), 127.6, 57.6, 55.9, 46.0, 43.1, 42.6, 30.9, 30.5, 29.5, 27.3, 26.5, 23.1, 22.7, 13.0, 12.9
³¹P NMR {¹H} (162 MHz, CD₂Cl₂, 298 K) δ, 49.96, 48.27, 46.93
HRMS (ESI) calcd for C₂₉H₃₈ClNPRuS₂⁺ [M − Cl]⁺: 632.0910, found: 632.0910
SI, pp. 15–16
Ru-4-H
NMR sample Mixture of 3 isomers differing by the relative orientation of the SEt groups with respect to the SNS ligand plane
¹H NMR (500 MHz, C₆D₆, 298 K) δ, 7.62 (m, 6H), 7.13 (t, J = 6.7 Hz, 6H), 7.04 (t, J = 7.0 Hz, 3H), [3.43 (m), 3.20 (br.s), 2H], 2.71 (m, 2H), 2.49 – 2.21 (m, 4H), 2.13 – 1.66 (m, 4H), 1.44 (br.s, 2H), 1.17 – 0.57 (m, 8H), [−22.00 (br.s), −22.86 (br.s), −24.25 (d, J = 48.4 Hz) 1H]
¹³C NMR {¹H} (126 MHz, C₆D₆, 298 K) δ, 142.4 (d, J = 32.9 Hz), 134.3 (d, J = 11.8 Hz), 127.6 (d, J = 7.1 Hz), 63.2, 48.5, 34.1, 33.1, 24.2, 14.1
³¹P NMR {¹H} (202 MHz, C₆D₆, 298 K) δ, 69.00, 68.14
HRMS (ESI) calcd for C₂₉H₃₉NPRuS₂⁺ [M + H]⁺: 598.1300, found: 598.1309
SI, pp. 17–18
Ru-5
¹H NMR (500 MHz, CD₂Cl₂, 298 K) δ, [7.66 (m), 7.58 (m), 7.53 (m), 6H], 7.33 (m, 9H), [4.30 (m), 4.13 (br.s), 3.80 (m), 3.58 (br.s), 2H], 3.55 – 3.38 (m, 2H), 3.36 (s, 3H), 3.24 (m, 1H), 2.74 (m, 3H), 2.56 –2.29 (m, 4H), [1.73 (br.s), 1.55 (m), 1.41 (dq, J = 14.7, 7.3 Hz) 1.37 – 1.17 (m), 4H], [1.01 (t, J = 7.3 Hz), 0.91 (m), 6H]
¹³C NMR {¹H} (126 MHz, CD₂Cl₂, 298 K) δ, 137.2 (d, J = 40.3 Hz, minor), 137.1 (d, J = 39.2 Hz, major), 134.7 (d, J = 9.5 Hz, minor), 134.6 (d, J = 9.9 Hz, major), 129.3 (major), 129.26(minor), 127.8 (d, J = 9.0 Hz), 127.6 (d, J = 8.9 Hz), 75.8(major), 75.7(minor), 56.1(minor), 56.0(major), 54.8(minor), 45.4(major), 42.5(minor), 36.6(major), 36.3 (minor), 29.5(major), 27.3 (minor), 13.0 (major), 12.8 (minor)
³¹P NMR {¹H} (202 MHz, CD₂Cl₂, 298 K) δ, 49.90, 48.28, 46.87
HRMS (ESI) calcd for C₃₀H₄₀ClNOPRuS₂⁺ [M − Cl]⁺: 662.1016, found: 662.1013
SI, pp. 19–20
Ru-5-H
¹H NMR (500 MHz, C₆D₆, 298 K) δ, 7.91 (m, 6H), 7.13 (m, 6H), 7.04 (m, 3H), 3.43 (br.s, 2H), 3.26 (s, 3H), 3.25 – 3.07 (m, 1H), 2.67 (br.s, 2H), 2.56 – 2.14 (m, 6H), 2.14 – 1.67 (m, 2H), 1.23 – 0.53 (m, 8H), [−22.22, −23.17, −24.50, 1H]
¹³C NMR {¹H} (126 MHz, C₆D₆, 298 K) δ, 142.3, 142.1, 134.4, 134.2, 127.7, 127.6, 78.0, 62.0, 55.0, 47.8, 38.9, 33.9, 14.0
³¹P NMR {¹H} (202 MHz, C₆D₆, 298 K) δ, 69.12 (br.s), 68.18(br.s)
SI, pp. 21–22
Ru-4-H₂
NMR observation (5 bar H₂) The presented NMR analysis, taken immediately after, demonstrated formation of ruthenium dihydrides
¹H NMR (500 MHz, C₆D₆, 298 K) δ, [8.38 (m, minor), 8.09 (m, major), 8.00 (m, minor), 7.94 (m, minor), 6H], 7.23 (m, 6H), 7.10 (m, 3H), 6.88 (m, 1H), 3.06 (m, 2H), 2.90 (t, J = 12.7 Hz, 2H), 2.57 (d, J = 12.4 Hz, 2H), 2.19 (dq, J = 14.1, 7.0 Hz, 2H), 1.95 (dq, J = 14.5, 7.1 Hz, 2H), 1.52 (m, 2H), 1.30 (m, 2H), 1.29–1.13 (m, 2H), [0.89 (m, minor), 0.75 (t, J = 7.3 Hz, major), 6H], [−6.12 (br.s, minor), −6.75 (d, J = 18.0 Hz, major), 1H], [−6.80 (br.s, minor), −7.14 (d, J = 17.2 Hz, major), 1H]. ]
¹³C NMR {¹H} (126 MHz, C₆D₆, 298 K) δ, 143.4 (d, J = 32.6 Hz), 134.6 (d, J = 11.0 Hz), 128.3, 127.4 (d, J = 8.2 Hz), 61.4, 44.7, 44.0, 28.8, 23.8, 14.0
³¹P NMR {¹H} (202 MHz, C₆D₆, 298 K) δ, 82.86 (minor), 76.93 (major)
SI, pp. 23–24
Ru-5-H₂
NMR observation (5 bar H₂) NMR analysis demonstrated formation of ruthenium dihydrides
¹H NMR (500 MHz, C₆D₆, 298 K) δ, [8.37 (br.s, minor), 8.15 (t, J = 8.3 Hz, major), 7.90 (m, minor), 6H], 7.26 (t, J = 7.4 Hz, 6H), 7.11 (t, J = 7.2 Hz, 3H), 6.59 (m, 1H), [3.25 (m, minor), 3.07 (m), 1H], 3.04 (s, 3H), 2.95 (m, 4H), 2.47 (q, J = 10.1 Hz, 2H), 2.17 (dq, J = 14.2, 7.1 Hz, 2H), 1.98 (dq, J = 14.7, 7.4 Hz, 2H), 1.68 (m, 2H), 1.46 (m, 2H), [0.89 (m, minor), 0.77 (t, J = 7.3 Hz), 6H], [−6.19 (br.s, minor) −6.78 (d, J = 18.1 Hz, major), 1H], [−6.79 (br.s, minor), −7.12 (d, J = 16.8 Hz, major), 1H]
¹³C NMR {¹H} (126 MHz, C₆D₆, 298 K) δ, 143.2 (d, J = 33.3 Hz), 134.8 (d, J = 11.0 Hz), 128.3, 127.4 (d, J = 8.3 Hz), 77.0, 59.8, 55.1, 44.2, 44.2, 34.9, 14.0
³¹P NMR {¹H} (202 MHz, C₆D₆, 298 K) δ, 82.82 (minor), 76.46 (major)
SI, pp. 25–26
Ru-4-EtOH
NMR observation NMR analysis demonstrated formation of new ruthenium hydride which was assigned as Ru-4-EtOH
¹H NMR (400 MHz, toluene-d₈) δ, 7.91 (br.s, 6H), 7.16 (m, 6H), 7.09 (m, 3H), 3.43 (q, J = 6.8 Hz, 2H, EtOH), 3.32–2.91 (m, 2H), 2.90–2.49 (m, 3H), 2.48–2.08 (m, 7H), [1.84 (m), 1.44 (m), 5H], 1.04 (t, J = 6.8 Hz, 3H, EtOH), [0.80 (m), 0.69 (m), 6H], [−20.55 (br.s), −20.79 (br.s), 1H]
³¹P NMR {¹H} (162 MHz, toluene-d₈) δ, 67.49, 66.54, 66.40
SI, p. 27
Ru-3 and Ru-4 with KOtBu and EtOH
NMR sample Ru-3 or Ru-4 (0.015 mmol), KOtBu (0.03 mmol), EtOH (11 mmol), and toluene-d₈
NMR monitoring duration 120 °C: 18 h; 150 °C: 21.5 h
NMR observation (120 °C, 30 min) Formation of ethoxides mer-Ru-4-EtOH and mer-Ru-3-EtOH was observed
NMR observation (150 °C) While for Ru-4 signals assigned to ruthenium hydrides persisted even at 150 °C, they completely disappeared in the case of Ru-3
Main, p. 11; SI, p. 117
Ru-4, Ru-5, Ru-4-H, and Ru-5-H
Single-crystal X-ray diffraction, structural assignment Single-crystal X-ray diffraction analysis confirmed both the syn configuration of the piperidine backbone and the meridional coordination geometry at ruthenium for all four complexes
Single-crystal X-ray diffraction, Ru-4 formula C₂₉H₃₈Cl₂NPRuS₂
Single-crystal X-ray diffraction, Ru-5 formula C₃₀H₄₀Cl₂NOPRuS₂
Single-crystal X-ray diffraction, Ru-4-H formula C₃₂H₄₅NPRuS₂
Single-crystal X-ray diffraction, Ru-5-H formula C₃₀H₄₀NOPRuS₂
Single-crystal X-ray diffraction, formula weight Ru-4: 667.66; Ru-5: 697.69; Ru-4-H: 639.85; Ru-5-H: 626.79
Single-crystal X-ray diffraction, crystal size (mm³) Ru-4: 0.16×0.10×0.01; Ru-5: 0.22×0.13×0.08; Ru-4-H: 0.25×0.13×0.09; Ru-5-H: 0.05×0.03×0.02
Single-crystal X-ray diffraction, temperature (K) Ru-4: 100; Ru-5: 100; Ru-4-H: 173; Ru-5-H: 100
Single-crystal X-ray diffraction, space group Ru-4: P2₁/c; Ru-5: P2₁/n; Ru-4-H: P1̅; Ru-5-H: P2₁/c
Single-crystal X-ray diffraction, a (Å) Ru-4: 10.4418(2); Ru-5: 10.50210(10); Ru-4-H: 10.02624(14); Ru-5-H: 11.2496(3)
Single-crystal X-ray diffraction, b (Å) Ru-4: 11.1881(3); Ru-5: 9.98430(10); Ru-4-H: 13.25359(19); Ru-5-H: 9.8687(3)
Single-crystal X-ray diffraction, c (Å) Ru-4: 25.2437(6); Ru-5: 29.4459(4); Ru-4-H: 13.95827(17); Ru-5-H: 26.4690(7)
Single-crystal X-ray diffraction, α (°) Ru-4-H: 64.4848(13)
Single-crystal X-ray diffraction, β (°) Ru-4: 92.325(2); Ru-5: 92.0490(10); Ru-4-H: 75.5067(11); Ru-5-H: 100.036(2)
Single-crystal X-ray diffraction, γ (°) Ru-4-H: 69.8446(13)
Single-crystal X-ray diffraction, volume (ų) Ru-4: 2946.64(12); Ru-5: 3085.61(6); Ru-4-H: 1560.02(4); Ru-5-H: 2893.60(14)
Single-crystal X-ray diffraction, Z Ru-4: 4; Ru-5: 4; Ru-4-H: 2; Ru-5-H: 4
Single-crystal X-ray diffraction, ρ (calc) (g/cm³) Ru-4: 1.505; Ru-5: 1.502; Ru-4-H: 1.362; Ru-5-H: 1.439
Single-crystal X-ray diffraction, μ (mm⁻¹) Ru-4: 0.929; Ru-5: 0.893; Ru-4-H: 0.709; Ru-5-H: 0.765
Single-crystal X-ray diffraction, F(000) Ru-4: 1376; Ru-5: 1440; Ru-4-H: 670; Ru-5-H: 1304
Single-crystal X-ray diffraction, reflections collected Ru-4: 65622; Ru-5: 68008; Ru-4-H: 34373; Ru-5-H: 60114
Single-crystal X-ray diffraction, independent reflections (Rᵢₙₜ) Ru-4: 7825 (0.0652); Ru-5: 8454 (0.0390); Ru-4-H: 7430 (0.0259); Ru-5-H: 7018 (0.0637)
Single-crystal X-ray diffraction, parameters, restraints Ru-4: 425, 25; Ru-5: 350, 1; Ru-4-H: 423, 128; Ru-5-H: 332, 1
Single-crystal X-ray diffraction, GoF on F² Ru-4: 1.100; Ru-5: 1.037; Ru-4-H: 1.043; Ru-5-H: 1.011
Single-crystal X-ray diffraction, R₁ [I > 2σ(I)] Ru-4: 0.0384; Ru-5: 0.0218; Ru-4-H: 0.0226; Ru-5-H: 0.0333
Single-crystal X-ray diffraction, wR₂ (all data) Ru-4: 0.0860; Ru-5: 0.0500; Ru-4-H: 0.0550; Ru-5-H: 0.0678
Single-crystal X-ray diffraction, largest difference peak/hole (e/ų) Ru-4: 0.882/−0.732; Ru-5: 0.435/−0.540; Ru-4-H: 0.420/−0.297; Ru-5-H: 0.535/−0.562
Single-crystal X-ray diffraction, Ru-4 disorder In Ru-4 about half of the L1 ligand and both the chlorides were disordered over two sites resulting from the formation of a nearly equal-part mixture of complexes with L1 adopting cis/trans arrangements of the thioether arms. The terminal methyl on the other half of L1 was also disordered
Single-crystal X-ray diffraction, Ru-4-H disorder In a similar manner in Ru-4 about half of the L1 ligand in Ru-4-H were disordered over two sites resulting from the formation of a small proportion (~15 %) of complexes with L1 adopting trans arrangements of the thioether arms. The hexane solvate was also disordered over two sites
Main, pp. 5, 13; SI, pp. 119–120
BDM obtained via PET hydrogenation using Ru-5
Residual ruthenium analysis (4210 MP-AES; the source also identifies the method as ICP-MS), sample 100 mg BDM dissolved in 10 mL of a 3 % HNO₃ solution in water
Residual ruthenium analysis, Main summary 0.4 ppm
Residual ruthenium analysis, SI summary 0.3-0.4 ppm
Residual ruthenium analysis, Ru (349.894 nm), replicates 1–3 (ppm) 0.41330708, 0.41770905, 0.40430529
Residual ruthenium analysis, Ru (372.693 nm), replicates 1–3 (ppm) 0.40324382, 0.40743294, 0.40637054
Residual ruthenium analysis, Ru (372.803 nm), replicates 1–3 (ppm) 0.39399378, 0.38434434, 0.38629267
Residual ruthenium analysis, Ru (379.935 nm), replicates 1–3 (ppm) 0.27823487, 0.29499592, 0.31806801