Model name: threestage
17-Nov-2021 22:54:45
Model parameters
| Parameter | BoundaryCondition | ConstantValue | Value | Units | Notes |
| k_ImpB_on | false | true | 1.0000e-03 | 1/uM/s | |
| k_ImpB_off | false | true | 1.0000e-04 | 1/s |
| Name | ConstantCapacity | Capacity | CapacityUnits | Notes |
| C | true | 1 | picoliter |
| Compartment | Name | ConstantAmount | InitialAmount | InitialAmountUnits | Notes |
| C | NPC(c) | false | 0.0100 | uM | |
| C | ImpB(c) | false | 1 | uM | |
| C | ImpB·NPC(c) | false | 0 | uM | |
| C | ImpB(n) | false | 0 | uM | |
| C | ImpA(c) | false | 1 | uM | |
| C | ImpA·ImpB·NPC(c) | false | 0 | uM | |
| C | ImpA·ImpB(c) | false | 0 | uM | |
| C | NLS(c) | false | 1 | uM | |
| C | NLS·ImpA·ImpB(c) | false | 0 | uM | |
| C | NLS·ImpA·ImpB·NPC(c) | false | 0 | uM | |
| C | Ran·GTP(n) | false | 3 | uM | |
| C | NLS(n) | false | 0 | uM | |
| C | Ran·GTP·ImpB·NPC(c) | false | 0 | uM | |
| C | CAS(c) | false | 1 | uM | |
| C | RanGAP | false | 0 | uM | |
| C | RanBP1 | false | 0 | uM | |
| C | Ran·GDP(c) | false | 0 | uM | |
| C | CAS·NPC(c) | false | 0 | uM | |
| C | CAS(n) | false | 0 | uM | |
| C | CAS·Ran·GTP(n) | false | 0 | uM | |
| C | ImpA·CAS·Ran·GTP(n) | false | 0 | uM | |
| C | ImpA·CAS·Ran·GTP·NPC(c) | false | 0 | uM | |
| C | ImpA(n) | false | 0 | uM | |
| C | ImpA·ImpB(n) | false | 0 | uM | |
| C | ImpA·CAS·Ran·GTP(c) | false | 0 | uM | |
| C | NLS·ImpA·ImpB(n) | false | 0 | uM | |
| C | ImpA·ImpB·NPC(n) | false | 0 | uM | |
| C | ImpB·NPC(n) | false | 0 | uM | |
| C | NPC(n) | false | 0.0100 | uM | 100 Kaps per NPC |
| C | NLS·ImpA·ImpB·NPC(n) | false | 0 | uM | |
| C | Ran·GTP·ImpB·NPC(n) | false | 0 | uM | |
| C | ImpA·CAS·Ran·GTP·NPC(n) | false | 0 | uM | |
| C | CAS·NPC(n) | false | 0 | uM | |
| C | ImpA·ImpB·NPC | false | 0 | uM | |
| C | ImpB·NPC | false | 0 | uM | |
| C | NPC | false | 1 | uM | |
| C | NLS·ImpA·ImpB·NPC | false | 0 | uM | |
| C | Ran·GTP·ImpB·NPC | false | 0 | uM | |
| C | ImpA·CAS·Ran·GTP·NPC | false | 0 | uM | |
| C | CAS·NPC | false | 0 | uM |
| ReactionName | Reaction | Parameter | ConstantValue | Value | Units | Notes |
| r7 | [ImpA(c)] + [ImpB(c)] <-> [ImpA·ImpB(c)] | kf | true | 0.4900 | 1/uM/s | |
| r7 | [ImpA(c)] + [ImpB(c)] <-> [ImpA·ImpB(c)] | kr | true | 0.0025 | 1/s | |
| r9 | [ImpA(c)] + [ImpB·NPC(c)] -> [ImpA·ImpB·NPC(c)] | kf | true | 0.4900 | 1/uM/s | |
| r9 | [ImpA(c)] + [ImpB·NPC(c)] -> [ImpA·ImpB·NPC(c)] | kr | true | 0.0025 | 1/s | |
| r10 | [NLS(c)] + [ImpA·ImpB(c)] <-> [NLS·ImpA·ImpB(c)] | kf | true | 0.1500 | 1/uM/s | |
| r10 | [NLS(c)] + [ImpA·ImpB(c)] <-> [NLS·ImpA·ImpB(c)] | kr | true | 4.4000e-04 | 1/s | |
| r11 | [NLS·ImpA·ImpB(c)] + [NPC(c)] <-> [NLS·ImpA·ImpB·NPC(c)] | kf | true | 1.0000e-03 | 1/uM/s | |
| r11 | [NLS·ImpA·ImpB(c)] + [NPC(c)] <-> [NLS·ImpA·ImpB·NPC(c)] | kr | true | 1.0000e-04 | 1/s | |
| r12 | [NLS(c)] + [ImpA·ImpB·NPC(c)] <-> [NLS·ImpA·ImpB·NPC(c)] | kf | true | 0.1500 | 1/uM/s | |
| r12 | [NLS(c)] + [ImpA·ImpB·NPC(c)] <-> [NLS·ImpA·ImpB·NPC(c)] | kr | true | 4.4000e-04 | 1/s | |
| knockoff | [Ran·GTP(n)] + [NLS·ImpA·ImpB·NPC(n)] -> [Ran·GTP·ImpB·NPC(n)] + [ImpA(n)] + [NLS(n)] | kf | true | 0.0200 | 1/uM/s | |
| hydrolysis of Ran·GTP·ImpB·NPC | [Ran·GTP·ImpB·NPC(c)] + RanGAP + RanBP1 -> [Ran·GDP(c)] + [ImpB·NPC(c)] + RanGAP + RanBP1 | kf | true | 0.1000 | 1/s | |
| CAS with NPC(c) | [CAS(c)] + [NPC(c)] <-> [CAS·NPC(c)] | kf | true | 1.0000e-03 | 1/uM/s | |
| CAS with NPC(c) | [CAS(c)] + [NPC(c)] <-> [CAS·NPC(c)] | kr | true | 1.0000e-03 | 1/s | |
| CAS with NPC(n) | [CAS(n)] + [NPC(n)] <-> [CAS·NPC(n)] | kf | true | 1.0000e-03 | 1/uM/s | |
| CAS with NPC(n) | [CAS(n)] + [NPC(n)] <-> [CAS·NPC(n)] | kr | true | 1.0000e-03 | 1/s | |
| CAS with Ran | [Ran·GTP(n)] + [CAS(n)] <-> [CAS·Ran·GTP(n)] | kf | true | 0.0100 | 1/uM/s | |
| CAS with Ran | [Ran·GTP(n)] + [CAS(n)] <-> [CAS·Ran·GTP(n)] | kr | true | 0.0150 | 1/s | |
| Complex CAS with NPC(n) | [ImpA·CAS·Ran·GTP(n)] + [NPC(n)] <-> [ImpA·CAS·Ran·GTP·NPC(n)] | kf | true | 1.0000e-03 | 1/uM/s | |
| Complex CAS with NPC(n) | [ImpA·CAS·Ran·GTP(n)] + [NPC(n)] <-> [ImpA·CAS·Ran·GTP·NPC(n)] | kr | true | 1.0000e-04 | 1/s | |
| hydrolysis of ImpA·CAS·Ran·GTP·NPC | [ImpA·CAS·Ran·GTP·NPC(c)] + RanGAP + RanBP1 -> [Ran·GDP(c)] + [ImpA(c)] + [CAS·NPC(c)] + RanGAP + RanBP1 | kf | true | 0.1000 | 1/s | |
| CAS·Ran with ImpA | [ImpA(n)] + [CAS·Ran·GTP(n)] <-> [ImpA·CAS·Ran·GTP(n)] | kf | true | 0.1000 | 1/uM/s | |
| CAS·Ran with ImpA | [ImpA(n)] + [CAS·Ran·GTP(n)] <-> [ImpA·CAS·Ran·GTP(n)] | kr | true | 1.0000e-04 | 1/s | |
| Ran gradient | [Ran·GDP(c)] -> [Ran·GTP(n)] | k_pump | true | 0.0100 | 1/s | |
| Complex CAS with NPC(c) | [ImpA·CAS·Ran·GTP(c)] + [NPC(c)] <-> [ImpA·CAS·Ran·GTP·NPC(c)] | kf | true | 1.0000e-03 | 1/uM/s | |
| Complex CAS with NPC(c) | [ImpA·CAS·Ran·GTP(c)] + [NPC(c)] <-> [ImpA·CAS·Ran·GTP·NPC(c)] | kr | true | 1.0000e-04 | 1/s | |
| Replenish NLS | null -> [NLS(c)] | kf | true | 0 | 1/s | |
| r12_1 | [NLS(n)] + [ImpA·ImpB·NPC(n)] <-> [NLS·ImpA·ImpB·NPC(n)] | kf | true | 0.1500 | 1/uM/s | |
| r12_1 | [NLS(n)] + [ImpA·ImpB·NPC(n)] <-> [NLS·ImpA·ImpB·NPC(n)] | kr | true | 4.4000e-04 | 1/s | |
| r10_1 | [NLS(n)] + [ImpA·ImpB(n)] <-> [NLS·ImpA·ImpB(n)] | kf | true | 0.1500 | 1/uM/s | |
| r10_1 | [NLS(n)] + [ImpA·ImpB(n)] <-> [NLS·ImpA·ImpB(n)] | kr | true | 4.4000e-04 | 1/s | |
| r11_1 | [NLS·ImpA·ImpB(n)] + [NPC(n)] <-> [NLS·ImpA·ImpB·NPC(n)] | kf | true | 1.0000e-03 | 1/uM/s | |
| r11_1 | [NLS·ImpA·ImpB(n)] + [NPC(n)] <-> [NLS·ImpA·ImpB·NPC(n)] | kr | true | 1.0000e-04 | 1/s | |
| Passive diffusion | [NLS(n)] <-> [NLS(c)] | k_diff | true | 0 | 1/s | |
| Entry ImpA·ImpB·NPC from (c) | [ImpA·ImpB·NPC(c)] + NPC <-> [ImpA·ImpB·NPC] + [NPC(c)] | kf | true | 100 | 1/s | |
| Entry ImpA·ImpB·NPC from (c) | [ImpA·ImpB·NPC(c)] + NPC <-> [ImpA·ImpB·NPC] + [NPC(c)] | kr | true | 100 | 1/s | |
| ImpA·ImpB·NPC from (n) | [ImpA·ImpB·NPC(n)] + NPC <-> [ImpA·ImpB·NPC] + [NPC(n)] | kf | true | 100 | 1/s | |
| ImpA·ImpB·NPC from (n) | [ImpA·ImpB·NPC(n)] + NPC <-> [ImpA·ImpB·NPC] + [NPC(n)] | kr | true | 100 | 1/s | |
| Entry ImpB·NPC from (c) | [ImpB·NPC(c)] + NPC <-> [ImpB·NPC] + [NPC(c)] | kf | true | 100 | 1/s | |
| Entry ImpB·NPC from (c) | [ImpB·NPC(c)] + NPC <-> [ImpB·NPC] + [NPC(c)] | kr | true | 100 | 1/s | |
| Entry ImpB·NPC from (n) | [ImpB·NPC(n)] + NPC <-> [ImpB·NPC] + [NPC(n)] | kf | true | 100 | 1/s | |
| Entry ImpB·NPC from (n) | [ImpB·NPC(n)] + NPC <-> [ImpB·NPC] + [NPC(n)] | kr | true | 100 | 1/s | |
| Entry NLS·ImpA·ImpB·NPC from (c) | [NLS·ImpA·ImpB·NPC(c)] + NPC <-> [NLS·ImpA·ImpB·NPC] + [NPC(c)] | kf | true | 100 | 1/s | |
| Entry NLS·ImpA·ImpB·NPC from (c) | [NLS·ImpA·ImpB·NPC(c)] + NPC <-> [NLS·ImpA·ImpB·NPC] + [NPC(c)] | kr | true | 100 | 1/s | |
| Entry NLS·ImpA·ImpB·NPC from (n) | [NLS·ImpA·ImpB·NPC(n)] + NPC <-> [NLS·ImpA·ImpB·NPC] + [NPC(n)] | kf | true | 100 | 1/s | |
| Entry NLS·ImpA·ImpB·NPC from (n) | [NLS·ImpA·ImpB·NPC(n)] + NPC <-> [NLS·ImpA·ImpB·NPC] + [NPC(n)] | kr | true | 100 | 1/s | |
| Entry Ran·GTP·ImpB·NPC from (c) | [Ran·GTP·ImpB·NPC(c)] + NPC <-> [Ran·GTP·ImpB·NPC] + [NPC(c)] | kf | true | 100 | 1/s | |
| Entry Ran·GTP·ImpB·NPC from (c) | [Ran·GTP·ImpB·NPC(c)] + NPC <-> [Ran·GTP·ImpB·NPC] + [NPC(c)] | kr | true | 100 | 1/s | |
| Entry Ran·GTP·ImpB·NPC from (n) | [Ran·GTP·ImpB·NPC(n)] + NPC <-> [Ran·GTP·ImpB·NPC] + [NPC(n)] | kf | true | 100 | 1/s | |
| Entry Ran·GTP·ImpB·NPC from (n) | [Ran·GTP·ImpB·NPC(n)] + NPC <-> [Ran·GTP·ImpB·NPC] + [NPC(n)] | kr | true | 100 | 1/s | |
| Entry ImpA·CAS·Ran·GTP·NPC from (c) | [ImpA·CAS·Ran·GTP·NPC(c)] + NPC <-> [ImpA·CAS·Ran·GTP·NPC] + [NPC(c)] | kf | true | 100 | 1/s | |
| Entry ImpA·CAS·Ran·GTP·NPC from (c) | [ImpA·CAS·Ran·GTP·NPC(c)] + NPC <-> [ImpA·CAS·Ran·GTP·NPC] + [NPC(c)] | kr | true | 100 | 1/s | |
| Entry ImpA·CAS·Ran·GTP·NPC from (n) | [ImpA·CAS·Ran·GTP·NPC(n)] + NPC <-> [ImpA·CAS·Ran·GTP·NPC] + [NPC(n)] | kf | true | 100 | 1/s | |
| Entry ImpA·CAS·Ran·GTP·NPC from (n) | [ImpA·CAS·Ran·GTP·NPC(n)] + NPC <-> [ImpA·CAS·Ran·GTP·NPC] + [NPC(n)] | kr | true | 100 | 1/s | |
| Entry CAS·NPC from (c) | [CAS·NPC(c)] + NPC <-> [CAS·NPC] + [NPC(c)] | kf | true | 100 | 1/s | |
| Entry CAS·NPC from (c) | [CAS·NPC(c)] + NPC <-> [CAS·NPC] + [NPC(c)] | kr | true | 100 | 1/s | |
| Entry CAS·NPC from (n) | [CAS·NPC(n)] + NPC <-> [CAS·NPC] + [NPC(n)] | kf | true | 100 | 1/s | |
| Entry CAS·NPC from (n) | [CAS·NPC(n)] + NPC <-> [CAS·NPC] + [NPC(n)] | kr | true | 100 | 1/s |
| Name | Active | Reversible | Reaction | ReactionRate | Notes |
| r1 | true | true | [ImpB(c)] + [NPC(c)] <-> [ImpB·NPC(c)] | k_ImpB_on*C.[ImpB(c)]*C.[NPC(c)]-k_ImpB_off*C.[ImpB·NPC(c)] | Constants: LK, email of Apr 2 |
| r2 | true | true | [ImpB(n)] + [NPC(n)] <-> [ImpB·NPC(n)] | k_ImpB_on*C.[ImpB(n)]*C.[NPC(n)]-k_ImpB_off*C.[ImpB·NPC(n)] | Constants: LK, email of Apr 2 |
| r8 | true | true | [ImpA·ImpB(c)] + [NPC(c)] <-> [ImpA·ImpB·NPC(c)] | k_ImpB_on*[ImpA·ImpB(c)]*[NPC(c)]-k_ImpB_off*[ImpA·ImpB·NPC(c)] | Same as ImpB+NPC |
| r7 | true | true | [ImpA(c)] + [ImpB(c)] <-> [ImpA·ImpB(c)] | r7.kf*[ImpA(c)]*[ImpB(c)]-r7.kr*[ImpA·ImpB(c)] | Catimel et al, 2001, Table I |
| r9 | true | false | [ImpA(c)] + [ImpB·NPC(c)] -> [ImpA·ImpB·NPC(c)] | r9.kf*[ImpA(c)]*[ImpB·NPC(c)]-r9.kr*[ImpA·ImpB·NPC(c)] | Same as ImpA+ImpB |
| r10 | true | true | [NLS(c)] + [ImpA·ImpB(c)] <-> [NLS·ImpA·ImpB(c)] | kf*[NLS(c)]*[ImpA·ImpB(c)]-kr*[NLS·ImpA·ImpB(c)] | Catimel et al, 2001, Table I |
| r11 | true | true | [NLS·ImpA·ImpB(c)] + [NPC(c)] <-> [NLS·ImpA·ImpB·NPC(c)] | kf*[NLS·ImpA·ImpB(c)]*[NPC(c)]-kr*[NLS·ImpA·ImpB·NPC(c)] | Same as ImpB+NPC |
| r12 | true | true | [NLS(c)] + [ImpA·ImpB·NPC(c)] <-> [NLS·ImpA·ImpB·NPC(c)] | kf*[NLS(c)]*[ImpA·ImpB·NPC(c)]-kr*[NLS·ImpA·ImpB·NPC(c)] | Same as r10 |
| knockoff | true | false | [Ran·GTP(n)] + [NLS·ImpA·ImpB·NPC(n)] -> [Ran·GTP·ImpB·NPC(n)] + [ImpA(n)] + [NLS(n)] | knockoff.kf*[Ran·GTP(n)]*[NLS·ImpA·ImpB·NPC(n)] | "knockoff" |
| hydrolysis of Ran·GTP·ImpB·NPC | true | false | [Ran·GTP·ImpB·NPC(c)] + RanGAP + RanBP1 -> [Ran·GDP(c)] + [ImpB·NPC(c)] + RanGAP + RanBP1 | kf*[Ran·GTP·ImpB·NPC(c)] | guesstimate |
| CAS with NPC(c) | true | true | [CAS(c)] + [NPC(c)] <-> [CAS·NPC(c)] | kf*[CAS(c)]*[NPC(c)]-kr*[CAS·NPC(c)] | guesstimate |
| CAS with NPC(n) | true | true | [CAS(n)] + [NPC(n)] <-> [CAS·NPC(n)] | kf*[CAS(n)]*[NPC(n)]-kr*[CAS·NPC(n)] | (copy) |
| CAS with Ran | true | true | [Ran·GTP(n)] + [CAS(n)] <-> [CAS·Ran·GTP(n)] | kf*[Ran·GTP(n)]*[CAS(n)]-kr*[CAS·Ran·GTP(n)] | "Estimate" from RM 2005, Table II kD = 1.44 uM (LK) |
| Complex CAS with NPC(n) | true | true | [ImpA·CAS·Ran·GTP(n)] + [NPC(n)] <-> [ImpA·CAS·Ran·GTP·NPC(n)] | kf*[ImpA·CAS·Ran·GTP(n)]*[NPC(n)]-kr*[ImpA·CAS·Ran·GTP·NPC(n)] | (copy) |
| hydrolysis of ImpA·CAS·Ran·GTP·NPC | true | false | [ImpA·CAS·Ran·GTP·NPC(c)] + RanGAP + RanBP1 -> [Ran·GDP(c)] + [ImpA(c)] + [CAS·NPC(c)] + RanGAP + RanBP1 | kf*[ImpA·CAS·Ran·GTP·NPC(c)] | guesstimate |
| CAS·Ran with ImpA | true | true | [ImpA(n)] + [CAS·Ran·GTP(n)] <-> [ImpA·CAS·Ran·GTP(n)] | kf*[ImpA(n)]*[CAS·Ran·GTP(n)] - kr * [ImpA·CAS·Ran·GTP(n)] | Est. based on RM 2005, Table II |
| Ran gradient | true | false | [Ran·GDP(c)] -> [Ran·GTP(n)] | k_pump*[Ran·GDP(c)] | guesstimate |
| r8_1 | true | true | [ImpA·ImpB(n)] + [NPC(n)] <-> [ImpA·ImpB·NPC(n)] | k_ImpB_on*C.[ImpA·ImpB(n)]*C.[NPC(n)]-k_ImpB_off*C.[ImpA·ImpB·NPC(n)] | Same as ImpB+NPC |
| r9_1 | true | false | [ImpA(n)] + [ImpB·NPC(n)] -> [ImpA·ImpB·NPC(n)] | r9.kf*C.[ImpA(n)]*C.[ImpB·NPC(n)]-r9.kr*C.[ImpA·ImpB·NPC(n)] | Same as ImpA+ImpB |
| r7_1 | false | true | [ImpA(n)] + [ImpB(n)] <-> [ImpA·ImpB(n)] | r7.kf*C.[ImpA(n)]*C.[ImpB(n)]-r7.kr*C.[ImpA·ImpB(n)] | see r7 Off, because no corresponding "knockoff" reaction. |
| Complex CAS with NPC(c) | true | true | [ImpA·CAS·Ran·GTP(c)] + [NPC(c)] <-> [ImpA·CAS·Ran·GTP·NPC(c)] | kf*C.[ImpA·CAS·Ran·GTP(c)]*C.[NPC(c)]-kr*C.[ImpA·CAS·Ran·GTP·NPC(c)] | guesstimate 10^3 -- 10^4 1/M/s koff: 1e-4 (wt) 1e-2 (mutant) |
| hydrolysis of ImpA·CAS·Ran·GTP(c) | true | false | [ImpA·CAS·Ran·GTP(c)] + RanGAP + RanBP1 -> [Ran·GDP(c)] + [ImpA(c)] + [CAS(c)] + RanGAP + RanBP1 | [hydrolysis of ImpA·CAS·Ran·GTP·NPC].kf*C.[ImpA·CAS·Ran·GTP(c)] | guesstimate |
| Replenish NLS | true | false | null -> [NLS(c)] | kf*[NLS(n)] | |
| r12_1 | true | true | [NLS(n)] + [ImpA·ImpB·NPC(n)] <-> [NLS·ImpA·ImpB·NPC(n)] | kf*C.[NLS(n)]*C.[ImpA·ImpB·NPC(n)]-kr*C.[NLS·ImpA·ImpB·NPC(n)] | See r12 |
| r10_1 | false | true | [NLS(n)] + [ImpA·ImpB(n)] <-> [NLS·ImpA·ImpB(n)] | kf*C.[NLS(n)]*C.[ImpA·ImpB(n)]-kr*C.[NLS·ImpA·ImpB(n)] | See r10 Off, because no corresponding "knockoff" reaction. |
| r11_1 | true | true | [NLS·ImpA·ImpB(n)] + [NPC(n)] <-> [NLS·ImpA·ImpB·NPC(n)] | kf*C.[NLS·ImpA·ImpB(n)]*C.[NPC(n)]-kr*C.[NLS·ImpA·ImpB·NPC(n)] | See r11 |
| Passive diffusion | true | true | [NLS(n)] <-> [NLS(c)] | k_diff * ([NLS(n)] - [NLS(c)]) | |
| Entry ImpA·ImpB·NPC from (c) | true | true | [ImpA·ImpB·NPC(c)] + NPC <-> [ImpA·ImpB·NPC] + [NPC(c)] | kf*[ImpA·ImpB·NPC(c)] - kr*[ImpA·ImpB·NPC] | |
| ImpA·ImpB·NPC from (n) | true | true | [ImpA·ImpB·NPC(n)] + NPC <-> [ImpA·ImpB·NPC] + [NPC(n)] | kf*[ImpA·ImpB·NPC(n)] - kr*[ImpA·ImpB·NPC] | |
| Entry ImpB·NPC from (c) | true | true | [ImpB·NPC(c)] + NPC <-> [ImpB·NPC] + [NPC(c)] | kf*[ImpB·NPC(c)] - kr*[ImpB·NPC] | |
| Entry ImpB·NPC from (n) | true | true | [ImpB·NPC(n)] + NPC <-> [ImpB·NPC] + [NPC(n)] | kf*[ImpB·NPC(n)] - kr*[ImpB·NPC] | |
| Entry NLS·ImpA·ImpB·NPC from (c) | true | true | [NLS·ImpA·ImpB·NPC(c)] + NPC <-> [NLS·ImpA·ImpB·NPC] + [NPC(c)] | kf*[NLS·ImpA·ImpB·NPC(c)] - kr*[NLS·ImpA·ImpB·NPC] | |
| Entry NLS·ImpA·ImpB·NPC from (n) | true | true | [NLS·ImpA·ImpB·NPC(n)] + NPC <-> [NLS·ImpA·ImpB·NPC] + [NPC(n)] | kf*[NLS·ImpA·ImpB·NPC(n)] - kr*[NLS·ImpA·ImpB·NPC] | |
| Entry Ran·GTP·ImpB·NPC from (c) | true | true | [Ran·GTP·ImpB·NPC(c)] + NPC <-> [Ran·GTP·ImpB·NPC] + [NPC(c)] | kf*[Ran·GTP·ImpB·NPC(c)] - kr*[Ran·GTP·ImpB·NPC] | |
| Entry Ran·GTP·ImpB·NPC from (n) | true | true | [Ran·GTP·ImpB·NPC(n)] + NPC <-> [Ran·GTP·ImpB·NPC] + [NPC(n)] | kf*[Ran·GTP·ImpB·NPC(n)] - kr*[Ran·GTP·ImpB·NPC] | |
| Entry ImpA·CAS·Ran·GTP·NPC from (c) | true | true | [ImpA·CAS·Ran·GTP·NPC(c)] + NPC <-> [ImpA·CAS·Ran·GTP·NPC] + [NPC(c)] | kf*[ImpA·CAS·Ran·GTP·NPC(c)] - kr*[ImpA·CAS·Ran·GTP·NPC] | |
| Entry ImpA·CAS·Ran·GTP·NPC from (n) | true | true | [ImpA·CAS·Ran·GTP·NPC(n)] + NPC <-> [ImpA·CAS·Ran·GTP·NPC] + [NPC(n)] | kf*[ImpA·CAS·Ran·GTP·NPC(n)] - kr*[ImpA·CAS·Ran·GTP·NPC] | |
| Entry CAS·NPC from (c) | true | true | [CAS·NPC(c)] + NPC <-> [CAS·NPC] + [NPC(c)] | kf*[CAS·NPC(c)] - kr*[CAS·NPC] | |
| Entry CAS·NPC from (n) | true | true | [CAS·NPC(n)] + NPC <-> [CAS·NPC] + [NPC(n)] | kf*[CAS·NPC(n)] - kr*[CAS·NPC] |
ODEs: d([NPC(c)])/dt = 1/C*(-r1 - r8 - r11 - [CAS with NPC(c)] - [Complex CAS with NPC(c)] + [Entry ImpA·ImpB·NPC from (c)] + [Entry ImpB·NPC from (c)] + [Entry NLS·ImpA·ImpB·NPC from (c)] + [Entry Ran·GTP·ImpB·NPC from (c)] + [Entry ImpA·CAS·Ran·GTP·NPC from (c)] + [Entry CAS·NPC from (c)]) d([ImpB(c)])/dt = 1/C*(-r1 - r7) d([ImpB·NPC(c)])/dt = 1/C*(r1 - r9 + [hydrolysis of Ran·GTP·ImpB·NPC] - [Entry ImpB·NPC from (c)]) d([ImpB(n)])/dt = 1/C*(-r2) d([ImpA(c)])/dt = 1/C*(-r7 - r9 + [hydrolysis of ImpA·CAS·Ran·GTP·NPC] + [hydrolysis of ImpA·CAS·Ran·GTP(c)]) d([ImpA·ImpB·NPC(c)])/dt = 1/C*(r8 + r9 - r12 - [Entry ImpA·ImpB·NPC from (c)]) d([ImpA·ImpB(c)])/dt = 1/C*(-r8 + r7 - r10) d([NLS(c)])/dt = 1/C*(-r10 - r12 + [Replenish NLS] + [Passive diffusion]) d([NLS·ImpA·ImpB(c)])/dt = 1/C*(r10 - r11) d([NLS·ImpA·ImpB·NPC(c)])/dt = 1/C*(r11 + r12 - [Entry NLS·ImpA·ImpB·NPC from (c)]) d([Ran·GTP(n)])/dt = 1/C*(-knockoff - [CAS with Ran] + [Ran gradient]) d([NLS(n)])/dt = 1/C*(knockoff - r12_1 - [Passive diffusion]) d([Ran·GTP·ImpB·NPC(c)])/dt = 1/C*(-[hydrolysis of Ran·GTP·ImpB·NPC] - [Entry Ran·GTP·ImpB·NPC from (c)]) d([CAS(c)])/dt = 1/C*(-[CAS with NPC(c)] + [hydrolysis of ImpA·CAS·Ran·GTP(c)]) d([Ran·GDP(c)])/dt = 1/C*([hydrolysis of Ran·GTP·ImpB·NPC] + [hydrolysis of ImpA·CAS·Ran·GTP·NPC] - [Ran gradient] + [hydrolysis of ImpA·CAS·Ran·GTP(c)]) d([CAS·NPC(c)])/dt = 1/C*([CAS with NPC(c)] + [hydrolysis of ImpA·CAS·Ran·GTP·NPC] - [Entry CAS·NPC from (c)]) d([CAS(n)])/dt = 1/C*(-[CAS with NPC(n)] - [CAS with Ran]) d([CAS·Ran·GTP(n)])/dt = 1/C*([CAS with Ran] - [CAS·Ran with ImpA]) d([ImpA·CAS·Ran·GTP(n)])/dt = 1/C*(-[Complex CAS with NPC(n)] + [CAS·Ran with ImpA]) d([ImpA·CAS·Ran·GTP·NPC(c)])/dt = 1/C*(-[hydrolysis of ImpA·CAS·Ran·GTP·NPC] + [Complex CAS with NPC(c)] - [Entry ImpA·CAS·Ran·GTP·NPC from (c)]) d([ImpA(n)])/dt = 1/C*(knockoff - [CAS·Ran with ImpA] - r9_1) d([ImpA·ImpB(n)])/dt = 1/C*(-r8_1) d([ImpA·CAS·Ran·GTP(c)])/dt = 1/C*(-[Complex CAS with NPC(c)] - [hydrolysis of ImpA·CAS·Ran·GTP(c)]) d([NLS·ImpA·ImpB(n)])/dt = 1/C*(-r11_1) d([ImpA·ImpB·NPC(n)])/dt = 1/C*(r8_1 + r9_1 - r12_1 - [ImpA·ImpB·NPC from (n)]) d([ImpB·NPC(n)])/dt = 1/C*(r2 - r9_1 - [Entry ImpB·NPC from (n)]) d([NPC(n)])/dt = 1/C*(-r2 - [CAS with NPC(n)] - [Complex CAS with NPC(n)] - r8_1 - r11_1 + [ImpA·ImpB·NPC from (n)] + [Entry ImpB·NPC from (n)] + [Entry NLS·ImpA·ImpB·NPC from (n)] + [Entry Ran·GTP·ImpB·NPC from (n)] + [Entry ImpA·CAS·Ran·GTP·NPC from (n)] + [Entry CAS·NPC from (n)]) d([NLS·ImpA·ImpB·NPC(n)])/dt = 1/C*(-knockoff + r12_1 + r11_1 - [Entry NLS·ImpA·ImpB·NPC from (n)]) d([Ran·GTP·ImpB·NPC(n)])/dt = 1/C*(knockoff - [Entry Ran·GTP·ImpB·NPC from (n)]) d([ImpA·CAS·Ran·GTP·NPC(n)])/dt = 1/C*([Complex CAS with NPC(n)] - [Entry ImpA·CAS·Ran·GTP·NPC from (n)]) d([CAS·NPC(n)])/dt = 1/C*([CAS with NPC(n)] - [Entry CAS·NPC from (n)]) d([ImpA·ImpB·NPC])/dt = 1/C*([Entry ImpA·ImpB·NPC from (c)] + [ImpA·ImpB·NPC from (n)]) d([ImpB·NPC])/dt = 1/C*([Entry ImpB·NPC from (c)] + [Entry ImpB·NPC from (n)]) d(NPC)/dt = 1/C*(-[Entry ImpA·ImpB·NPC from (c)] - [ImpA·ImpB·NPC from (n)] - [Entry ImpB·NPC from (c)] - [Entry ImpB·NPC from (n)] - [Entry NLS·ImpA·ImpB·NPC from (c)] - [Entry NLS·ImpA·ImpB·NPC from (n)] - [Entry Ran·GTP·ImpB·NPC from (c)] - [Entry Ran·GTP·ImpB·NPC from (n)] - [Entry ImpA·CAS·Ran·GTP·NPC from (c)] - [Entry ImpA·CAS·Ran·GTP·NPC from (n)] - [Entry CAS·NPC from (c)] - [Entry CAS·NPC from (n)]) d([NLS·ImpA·ImpB·NPC])/dt = 1/C*([Entry NLS·ImpA·ImpB·NPC from (c)] + [Entry NLS·ImpA·ImpB·NPC from (n)]) d([Ran·GTP·ImpB·NPC])/dt = 1/C*([Entry Ran·GTP·ImpB·NPC from (c)] + [Entry Ran·GTP·ImpB·NPC from (n)]) d([ImpA·CAS·Ran·GTP·NPC])/dt = 1/C*([Entry ImpA·CAS·Ran·GTP·NPC from (c)] + [Entry ImpA·CAS·Ran·GTP·NPC from (n)]) d([CAS·NPC])/dt = 1/C*([Entry CAS·NPC from (c)] + [Entry CAS·NPC from (n)]) Fluxes: r1 = (k_ImpB_on*[ImpB(c)]*[NPC(c)]-k_ImpB_off*[ImpB·NPC(c)])*C r2 = (k_ImpB_on*[ImpB(n)]*[NPC(n)]-k_ImpB_off*[ImpB·NPC(n)])*C r8 = (k_ImpB_on*[ImpA·ImpB(c)]*[NPC(c)]-k_ImpB_off*[ImpA·ImpB·NPC(c)])*C r7 = (r7.kf*[ImpA(c)]*[ImpB(c)]-r7.kr*[ImpA·ImpB(c)])*C r9 = (r9.kf*[ImpA(c)]*[ImpB·NPC(c)]-r9.kr*[ImpA·ImpB·NPC(c)])*C r10 = (r10.kf*[NLS(c)]*[ImpA·ImpB(c)]-r10.kr*[NLS·ImpA·ImpB(c)])*C r11 = (r11.kf*[NLS·ImpA·ImpB(c)]*[NPC(c)]-r11.kr*[NLS·ImpA·ImpB·NPC(c)])*C r12 = (r12.kf*[NLS(c)]*[ImpA·ImpB·NPC(c)]-r12.kr*[NLS·ImpA·ImpB·NPC(c)])*C knockoff = (knockoff.kf*[Ran·GTP(n)]*[NLS·ImpA·ImpB·NPC(n)])*C [hydrolysis of Ran·GTP·ImpB·NPC] = ([hydrolysis of Ran·GTP·ImpB·NPC].kf*[Ran·GTP·ImpB·NPC(c)])*C [CAS with NPC(c)] = ([CAS with NPC(c)].kf*[CAS(c)]*[NPC(c)]-[CAS with NPC(c)].kr*[CAS·NPC(c)])*C [CAS with NPC(n)] = ([CAS with NPC(n)].kf*[CAS(n)]*[NPC(n)]-[CAS with NPC(n)].kr*[CAS·NPC(n)])*C [CAS with Ran] = ([CAS with Ran].kf*[Ran·GTP(n)]*[CAS(n)]-[CAS with Ran].kr*[CAS·Ran·GTP(n)])*C [Complex CAS with NPC(n)] = ([Complex CAS with NPC(n)].kf*[ImpA·CAS·Ran·GTP(n)]*[NPC(n)]-[Complex CAS with NPC(n)].kr*[ImpA·CAS·Ran·GTP·NPC(n)])*C [hydrolysis of ImpA·CAS·Ran·GTP·NPC] = ([hydrolysis of ImpA·CAS·Ran·GTP·NPC].kf*[ImpA·CAS·Ran·GTP·NPC(c)])*C [CAS·Ran with ImpA] = ([CAS·Ran with ImpA].kf*[ImpA(n)]*[CAS·Ran·GTP(n)]-[CAS·Ran with ImpA].kr*[ImpA·CAS·Ran·GTP(n)])*C [Ran gradient] = (k_pump*[Ran·GDP(c)])*C r8_1 = (k_ImpB_on*[ImpA·ImpB(n)]*[NPC(n)]-k_ImpB_off*[ImpA·ImpB·NPC(n)])*C r9_1 = (r9.kf*[ImpA(n)]*[ImpB·NPC(n)]-r9.kr*[ImpA·ImpB·NPC(n)])*C [Complex CAS with NPC(c)] = ([Complex CAS with NPC(c)].kf*[ImpA·CAS·Ran·GTP(c)]*[NPC(c)]-[Complex CAS with NPC(c)].kr*[ImpA·CAS·Ran·GTP·NPC(c)])*C [hydrolysis of ImpA·CAS·Ran·GTP(c)] = ([hydrolysis of ImpA·CAS·Ran·GTP·NPC].kf*[ImpA·CAS·Ran·GTP(c)])*C [Replenish NLS] = ([Replenish NLS].kf*[NLS(n)])*C r12_1 = (r12_1.kf*[NLS(n)]*[ImpA·ImpB·NPC(n)]-r12_1.kr*[NLS·ImpA·ImpB·NPC(n)])*C r11_1 = (r11_1.kf*[NLS·ImpA·ImpB(n)]*[NPC(n)]-r11_1.kr*[NLS·ImpA·ImpB·NPC(n)])*C [Passive diffusion] = (k_diff*([NLS(n)]-[NLS(c)]))*C [Entry ImpA·ImpB·NPC from (c)] = ([Entry ImpA·ImpB·NPC from (c)].kf*[ImpA·ImpB·NPC(c)]-[Entry ImpA·ImpB·NPC from (c)].kr*[ImpA·ImpB·NPC])*C [ImpA·ImpB·NPC from (n)] = ([ImpA·ImpB·NPC from (n)].kf*[ImpA·ImpB·NPC(n)]-[ImpA·ImpB·NPC from (n)].kr*[ImpA·ImpB·NPC])*C [Entry ImpB·NPC from (c)] = ([Entry ImpB·NPC from (c)].kf*[ImpB·NPC(c)]-[Entry ImpB·NPC from (c)].kr*[ImpB·NPC])*C [Entry ImpB·NPC from (n)] = ([Entry ImpB·NPC from (n)].kf*[ImpB·NPC(n)]-[Entry ImpB·NPC from (n)].kr*[ImpB·NPC])*C [Entry NLS·ImpA·ImpB·NPC from (c)] = ([Entry NLS·ImpA·ImpB·NPC from (c)].kf*[NLS·ImpA·ImpB·NPC(c)]-[Entry NLS·ImpA·ImpB·NPC from (c)].kr*[NLS·ImpA·ImpB·NPC])*C [Entry NLS·ImpA·ImpB·NPC from (n)] = ([Entry NLS·ImpA·ImpB·NPC from (n)].kf*[NLS·ImpA·ImpB·NPC(n)]-[Entry NLS·ImpA·ImpB·NPC from (n)].kr*[NLS·ImpA·ImpB·NPC])*C [Entry Ran·GTP·ImpB·NPC from (c)] = ([Entry Ran·GTP·ImpB·NPC from (c)].kf*[Ran·GTP·ImpB·NPC(c)]-[Entry Ran·GTP·ImpB·NPC from (c)].kr*[Ran·GTP·ImpB·NPC])*C [Entry Ran·GTP·ImpB·NPC from (n)] = ([Entry Ran·GTP·ImpB·NPC from (n)].kf*[Ran·GTP·ImpB·NPC(n)]-[Entry Ran·GTP·ImpB·NPC from (n)].kr*[Ran·GTP·ImpB·NPC])*C [Entry ImpA·CAS·Ran·GTP·NPC from (c)] = ([Entry ImpA·CAS·Ran·GTP·NPC from (c)].kf*[ImpA·CAS·Ran·GTP·NPC(c)]-[Entry ImpA·CAS·Ran·GTP·NPC from (c)].kr*[ImpA·CAS·Ran·GTP·NPC])*C [Entry ImpA·CAS·Ran·GTP·NPC from (n)] = ([Entry ImpA·CAS·Ran·GTP·NPC from (n)].kf*[ImpA·CAS·Ran·GTP·NPC(n)]-[Entry ImpA·CAS·Ran·GTP·NPC from (n)].kr*[ImpA·CAS·Ran·GTP·NPC])*C [Entry CAS·NPC from (c)] = ([Entry CAS·NPC from (c)].kf*[CAS·NPC(c)]-[Entry CAS·NPC from (c)].kr*[CAS·NPC])*C [Entry CAS·NPC from (n)] = ([Entry CAS·NPC from (n)].kf*[CAS·NPC(n)]-[Entry CAS·NPC from (n)].kr*[CAS·NPC])*C Parameter Values: k_ImpB_on = 0.001 k_ImpB_off = 0.0001 r7.kf = 0.49 r7.kr = 0.0025 r9.kf = 0.49 r9.kr = 0.0025 r10.kf = 0.15 r10.kr = 0.00044 r11.kf = 0.001 r11.kr = 0.0001 r12.kf = 0.15 r12.kr = 0.00044 knockoff.kf = 0.02 [hydrolysis of Ran·GTP·ImpB·NPC].kf = 0.1 [CAS with NPC(c)].kf = 0.001 [CAS with NPC(c)].kr = 0.001 [CAS with NPC(n)].kf = 0.001 [CAS with NPC(n)].kr = 0.001 [CAS with Ran].kf = 0.01 [CAS with Ran].kr = 0.015 [Complex CAS with NPC(n)].kf = 0.001 [Complex CAS with NPC(n)].kr = 0.0001 [hydrolysis of ImpA·CAS·Ran·GTP·NPC].kf = 0.1 [CAS·Ran with ImpA].kf = 0.1 [CAS·Ran with ImpA].kr = 0.0001 k_pump = 0.01 [Complex CAS with NPC(c)].kf = 0.001 [Complex CAS with NPC(c)].kr = 0.0001 [Replenish NLS].kf = 0 r12_1.kf = 0.15 r12_1.kr = 0.00044 r10_1.kf = 0.15 r10_1.kr = 0.00044 r11_1.kf = 0.001 r11_1.kr = 0.0001 k_diff = 0 [Entry ImpA·ImpB·NPC from (c)].kf = 100 [Entry ImpA·ImpB·NPC from (c)].kr = 100 [ImpA·ImpB·NPC from (n)].kf = 100 [ImpA·ImpB·NPC from (n)].kr = 100 [Entry ImpB·NPC from (c)].kf = 100 [Entry ImpB·NPC from (c)].kr = 100 [Entry ImpB·NPC from (n)].kf = 100 [Entry ImpB·NPC from (n)].kr = 100 [Entry NLS·ImpA·ImpB·NPC from (c)].kf = 100 [Entry NLS·ImpA·ImpB·NPC from (c)].kr = 100 [Entry NLS·ImpA·ImpB·NPC from (n)].kf = 100 [Entry NLS·ImpA·ImpB·NPC from (n)].kr = 100 [Entry Ran·GTP·ImpB·NPC from (c)].kf = 100 [Entry Ran·GTP·ImpB·NPC from (c)].kr = 100 [Entry Ran·GTP·ImpB·NPC from (n)].kf = 100 [Entry Ran·GTP·ImpB·NPC from (n)].kr = 100 [Entry ImpA·CAS·Ran·GTP·NPC from (c)].kf = 100 [Entry ImpA·CAS·Ran·GTP·NPC from (c)].kr = 100 [Entry ImpA·CAS·Ran·GTP·NPC from (n)].kf = 100 [Entry ImpA·CAS·Ran·GTP·NPC from (n)].kr = 100 [Entry CAS·NPC from (c)].kf = 100 [Entry CAS·NPC from (c)].kr = 100 [Entry CAS·NPC from (n)].kf = 100 [Entry CAS·NPC from (n)].kr = 100 C = 1 Initial Conditions: [NPC(c)] = 0.01 [ImpB(c)] = 1 [ImpB·NPC(c)] = 0 [ImpB(n)] = 0 [ImpA(c)] = 1 [ImpA·ImpB·NPC(c)] = 0 [ImpA·ImpB(c)] = 0 [NLS(c)] = 1 [NLS·ImpA·ImpB(c)] = 0 [NLS·ImpA·ImpB·NPC(c)] = 0 [Ran·GTP(n)] = 3 [NLS(n)] = 0 [Ran·GTP·ImpB·NPC(c)] = 0 [CAS(c)] = 1 [Ran·GDP(c)] = 0 [CAS·NPC(c)] = 0 [CAS(n)] = 0 [CAS·Ran·GTP(n)] = 0 [ImpA·CAS·Ran·GTP(n)] = 0 [ImpA·CAS·Ran·GTP·NPC(c)] = 0 [ImpA(n)] = 0 [ImpA·ImpB(n)] = 0 [ImpA·CAS·Ran·GTP(c)] = 0 [NLS·ImpA·ImpB(n)] = 0 [ImpA·ImpB·NPC(n)] = 0 [ImpB·NPC(n)] = 0 [NPC(n)] = 0.01 [NLS·ImpA·ImpB·NPC(n)] = 0 [Ran·GTP·ImpB·NPC(n)] = 0 [ImpA·CAS·Ran·GTP·NPC(n)] = 0 [CAS·NPC(n)] = 0 [ImpA·ImpB·NPC] = 0 [ImpB·NPC] = 0 NPC = 1 [NLS·ImpA·ImpB·NPC] = 0 [Ran·GTP·ImpB·NPC] = 0 [ImpA·CAS·Ran·GTP·NPC] = 0 [CAS·NPC] = 0 RanGAP = 0 RanBP1 = 0