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Description: |
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With RanGTP regeneration |
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Without RanGTP regeneration |
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Low ImpB |
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Increase ImpB |
Increase #NPC |
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Decrease ImpA |
Almost no ImpA |
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Low ImpB |
Increase ImpB |
Increase #NPC |
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Compartment |
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C |
Value |
picoliter |
C = Vol of cytoplasm = Vol of nucleus |
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1 |
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1 |
1 |
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1 |
1 |
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1 |
1 |
1 |
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Initial values |
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Species |
C |
CAS(c) |
Value |
uM |
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1 |
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1 |
1 |
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1 |
1 |
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1 |
1 |
1 |
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Species |
C |
CAS(n) |
Value |
uM |
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0 |
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0 |
0 |
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0 |
0 |
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0 |
0 |
0 |
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Species |
C |
Ran·GTP(n) |
Value |
uM |
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3 |
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3 |
3 |
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3 |
3 |
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3 |
3 |
3 |
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For the first scenario, equals to count: |
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Species |
C |
NPC(c) |
Value |
uM |
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6000 |
0.01 |
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0.01 |
0.1 |
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0.01 |
0.01 |
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0.01 |
0.01 |
0.1 |
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Species |
C |
NPC |
Value |
uM |
Inner capacity |
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600000 |
1 |
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1 |
10 |
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1 |
1 |
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1 |
1 |
10 |
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Species |
C |
NPC(n) |
Value |
uM |
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6000 |
0.01 |
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0.01 |
0.1 |
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0.01 |
0.01 |
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0.01 |
0.01 |
0.1 |
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Species |
C |
ImpB(c) |
Value |
uM |
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0.05 |
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10 |
10 |
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0.05 |
0.05 |
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0.05 |
10 |
10 |
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Species |
C |
ImpB(n) |
Value |
uM |
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0 |
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0 |
0 |
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0 |
0 |
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0 |
0 |
0 |
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Species |
C |
ImpA(c) |
Value |
uM |
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0.5 |
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0.5 |
0.5 |
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0.1 |
1e-6 |
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0.5 |
0.5 |
0.5 |
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Species |
C |
ImpA(n) |
Value |
uM |
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0.5 |
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0.5 |
0.5 |
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0.1 |
1e-6 |
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0.5 |
0.5 |
0.5 |
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Kinetic constants |
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Reaction |
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hydrolysis of Ran·GTP·ImpB·NPC |
kf |
1/s |
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0.1 |
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0.1 |
0.1 |
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0.1 |
0.1 |
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0.1 |
0.1 |
0.1 |
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Reaction |
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hydrolysis of ImpA·CAS·Ran·GTP·NPC |
kf |
1/s |
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1e-2 |
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1e-2 |
1e-2 |
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1e-2 |
1e-2 |
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1e-2 |
1e-2 |
1e-2 |
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Reaction |
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CAS with Ran |
kf |
1/uM/s |
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0.01 |
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0.01 |
0.01 |
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0.01 |
0.01 |
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0.01 |
0.01 |
0.01 |
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Reaction |
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CAS with Ran |
kr |
1/s |
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0.015 |
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0.015 |
0.015 |
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0.015 |
0.015 |
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0.015 |
0.015 |
0.015 |
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Reaction |
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CAS with NPC(c) |
kf |
1/uM/s |
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1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
1e-3 |
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Reaction |
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CAS with NPC(c) |
kr |
1/s |
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1e-4 |
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1e-4 |
1e-4 |
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1e-4 |
1e-4 |
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1e-4 |
1e-4 |
1e-4 |
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Reaction |
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CAS with NPC(n) |
kf |
1/uM/s |
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1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
1e-3 |
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Reaction |
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CAS with NPC(n) |
kr |
1/s |
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1e-4 |
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1e-4 |
1e-4 |
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1e-4 |
1e-4 |
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1e-4 |
1e-4 |
1e-4 |
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Reaction |
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CAS·Ran with ImpA |
kf |
1/uM/s |
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0.1 |
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0.1 |
0.1 |
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0.1 |
0.1 |
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0.1 |
0.1 |
0.1 |
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Reaction |
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CAS·Ran with ImpA |
kr |
1/s |
kD = 1nM |
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1e-4 |
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1e-4 |
1e-4 |
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1e-4 |
1e-4 |
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1e-4 |
1e-4 |
1e-4 |
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Reaction |
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Complex CAS with NPC(c) |
kf |
1/uM/s |
"Complex CAS" = ImpA·CAS·Ran·GTP |
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1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
1e-3 |
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Reaction |
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Complex CAS with NPC(c) |
kr |
1/s |
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1e-5 |
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1e-5 |
1e-5 |
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1e-5 |
1e-5 |
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1e-5 |
1e-5 |
1e-5 |
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Reaction |
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Complex CAS with NPC(n) |
kf |
1/uM/s |
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1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
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1e-3 |
1e-3 |
1e-3 |
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Reaction |
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Complex CAS with NPC(n) |
kr |
1/s |
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1e-5 |
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1e-5 |
1e-5 |
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1e-5 |
1e-5 |
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1e-5 |
1e-5 |
1e-5 |
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Reaction |
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Replenish NLS |
kf |
1/s |
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0 |
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0 |
0 |
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0 |
0 |
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0 |
0 |
0 |
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Reaction |
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Passive diffusion |
k_diff |
1/s |
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0 |
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0 |
0 |
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0 |
0 |
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0 |
0 |
0 |
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Reaction |
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Ran gradient |
k_pump |
1/s |
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1e-2 |
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1e-2 |
1e-2 |
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1e-2 |
1e-2 |
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0 |
0 |
0 |
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For uploaded results, see: |
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https://numpde.github.io/nct1/code/20211018-Appli/checkpoint/ |
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